#################################### ### Log file for DDRP v2 ### #################################### BASE DIR: /data/PRISM/ WORKING DIR: /data/PRISM/2019 EXISTING OUTPUT DIR: /home/httpd/html/dodtmp/8228; removing all files PARAMETER AND SETTINGS SETUP: getting parameters to use in model Species params: /usr/local/dds/DDRP_DOD/ddrp_v2/spp_params/GCA.params Reading params for species: GCA Fullname: Neogalerucella calmariensis METADATA: creating metadata file for all inputs used in model Done writing metadata file PRISM DATA PROCESSING Finished loading PRISM files for 244 days Creating template file for CONUS Splitting template into 4 tiles Cropping tmax and tmin tiles for CONUS Done processing PRISM data DAILY LOOP Sampling every 61 days between 20190502 and 20191231 Running daily loop for cohorts 1 2 Running daily loop for cohorts 3 4 Running daily loop for cohorts 5 6 Daily loop done (run time = 3.7 min) FINAL ANALYSES AND MAP PRODUCTION Merging tiles for CONUS Merged PEMe0 tiles for cohort 1 Merged PEMa0 tiles for cohort 1 Merged PEMe0 tiles for cohort 2 Merged AttVolt tiles for cohort 1 Merged PEMa0 tiles for cohort 2 Merged FullVolt tiles for cohort 1 Merged PEMe0 tiles for cohort 3 Merged PEMa0 tiles for cohort 3 Merged PEMa0 tiles for cohort 4 Merged PEMe0 tiles for cohort 4 Merged AttVolt tiles for cohort 2 Merged FullVolt tiles for cohort 2 Merged PEMa0 tiles for cohort 5 Merged PEMe0 tiles for cohort 5 Merged PEMa0 tiles for cohort 6 Merged PEMe0 tiles for cohort 6 Merged AttVolt tiles for cohort 3 Merged PEMa1 tiles for cohort 1 Merged PEMe1 tiles for cohort 1 Merged FullVolt tiles for cohort 3 Merged PEMa1 tiles for cohort 2 Merged PEMe1 tiles for cohort 2 Merged AttVolt tiles for cohort 4 Merged PEMa1 tiles for cohort 3 Merged PEMe1 tiles for cohort 3 Merged PEMa1 tiles for cohort 4 Merged PEMe1 tiles for cohort 4 Merged FullVolt tiles for cohort 4 Merged AttVolt tiles for cohort 5 Merged PEMa1 tiles for cohort 5 Merged PEMe1 tiles for cohort 5 Merged PEMa1 tiles for cohort 6 Merged PEMe1 tiles for cohort 6 Merged FullVolt tiles for cohort 5 Merged AttVolt tiles for cohort 6 Merged PEMa2 tiles for cohort 1 Merged PEMe2 tiles for cohort 1 Merged PEMa2 tiles for cohort 2 Merged PEMe2 tiles for cohort 2 Merged PEMa2 tiles for cohort 3 Merged DDtotal tiles for cohort 1 Merged FullVolt tiles for cohort 6 Merged PEMe2 tiles for cohort 3 Merged PEMa2 tiles for cohort 4 Merged PEMe2 tiles for cohort 4 Merged PEMa2 tiles for cohort 5 Merged PEMe2 tiles for cohort 5 Merged Diapause tiles for cohort 1 Merged Lifestage tiles for cohort 1 Merged PEMa2 tiles for cohort 6 Merged PEMe2 tiles for cohort 6 Merged PEMl0 tiles for cohort 1 Merged PEMp0 tiles for cohort 1 Merged Diapause tiles for cohort 2 Merged PEMl0 tiles for cohort 2 Merged PEMp0 tiles for cohort 2 Merged Lifestage tiles for cohort 2 Merged PEMl0 tiles for cohort 3 Merged PEMp0 tiles for cohort 3 Merged Diapause tiles for cohort 3 Merged PEMl0 tiles for cohort 4 Merged PEMp0 tiles for cohort 4 Merged Lifestage tiles for cohort 3 Merged PEMl0 tiles for cohort 5 Merged PEMp0 tiles for cohort 5 Merged Diapause tiles for cohort 4 Merged PEMl0 tiles for cohort 6 Merged PEMp0 tiles for cohort 6 Merged PEMl1 tiles for cohort 1 Merged Lifestage tiles for cohort 4 Merged PEMp1 tiles for cohort 1 Merged PEMl1 tiles for cohort 2 Merged Diapause tiles for cohort 5 Merged PEMp1 tiles for cohort 2 Merged PEMl1 tiles for cohort 3 Merged Lifestage tiles for cohort 5 Merged PEMp1 tiles for cohort 3 Merged PEMl1 tiles for cohort 4 Merged Diapause tiles for cohort 6 Merged PEMp1 tiles for cohort 4 Merged PEMl1 tiles for cohort 5 Merged PEMp1 tiles for cohort 5 Merged PEMl1 tiles for cohort 6 Merged Lifestage tiles for cohort 6 Merged PEMp1 tiles for cohort 6 Merged PEMl2 tiles for cohort 1 Merged PEMp2 tiles for cohort 1 Merged NumGen tiles for cohort 1 Merged PEMl2 tiles for cohort 2 Merged PEMp2 tiles for cohort 2 Merged PEMl2 tiles for cohort 3 Merged PEMp2 tiles for cohort 3 Merged PEMl2 tiles for cohort 4 Merged NumGen tiles for cohort 2 Merged PEMp2 tiles for cohort 4 Merged PEMl2 tiles for cohort 5 Merged PEMp2 tiles for cohort 5 Merged PEMl2 tiles for cohort 6 Merged NumGen tiles for cohort 3 Merged PEMp2 tiles for cohort 6 Merged NumGen tiles for cohort 4 Merged NumGen tiles for cohort 5 Merged NumGen tiles for cohort 6 Done merging tiles Deleting tiles for CONUS Deleted tile files for AttVolt Deleted tile files for Diapause Deleted tile files for FullVolt Deleted tile files for Lifestage Deleted tile files for NumGen Deleted tile files for PEMa0 Deleted tile files for PEMa1 Deleted tile files for PEMa2 Deleted tile files for PEMe0 Deleted tile files for PEMe1 Deleted tile files for PEMe2 Deleted tile files for PEMl0 Deleted tile files for PEMl1 Deleted tile files for PEMl2 Deleted tile files for PEMp0 Deleted tile files for PEMp1 Deleted tile files for PEMp2 Done deleting tile files ### SUMMARY MAPS: DDTOTAL ### Saving summary map: Misc_output/DDtotal_20190831.png - Number of accumulated degree-days on 08/31/2019 Saving summary map: Misc_output/DDtotal_20190701.png - Number of accumulated degree-days on 07/01/2019 Saving summary map: Misc_output/DDtotal_20191031.png - Number of accumulated degree-days on 10/31/2019 Saving summary map: Misc_output/DDtotal_20191231.png - Number of accumulated degree-days on 12/31/2019 Done with DDtotal maps ### RASTER AND SUMMARY MAP OUTPUTS: STAGE COUNT ### Saving summary map: StageCount_20190701.png - Stage count on 07/01/2019 Saving summary map: StageCount_20191031.png - Stage count on 10/31/2019 Saving summary map: StageCount_20191231.png - Stage count on 12/31/2019 Saving summary map: StageCount_20190831.png - Stage count on 08/31/2019 Done with raster and summary map outputs for StageCount ### RASTER AND SUMMARY MAP OUTPUTS: PEST EVENT MAPS ### Saving raster: Avg_PEMe1_20191231.tif - Avg. date of 1st gen. egg hatch Saving raster: Avg_PEMe2_20191231.tif - Avg. date of 2nd gen. egg hatch Saving raster: Avg_PEMl2_20191231.tif - Avg. date of 2nd gen. larval development Saving raster: Avg_PEMa2_20191231.tif - Avg. date of 2nd gen. egg laying Saving raster: Avg_PEMa1_20191231.tif - Avg. date of 1st gen. egg laying Saving raster: Avg_PEMp2_20191231.tif - Avg. date of 2nd gen. adult emergence Saving raster: Avg_PEMp1_20191231.tif - Avg. date of 1st gen. adult emergence Saving raster: Avg_PEMl1_20191231.tif - Avg. date of 1st gen. larval development Saving summary map: Avg_PEMa2_20191231.png - Avg. date of 2nd gen. egg laying Saving summary map: Avg_PEMp2_20191231.png - Avg. date of 2nd gen. adult emergence Saving raster: Earliest_PEMa2_20191231.tif - Earliest date of 2nd gen. egg laying Saving summary map: Avg_PEMl2_20191231.png - Avg. date of 2nd gen. larval development Saving summary map: Avg_PEMe2_20191231.png - Avg. date of 2nd gen. egg hatch Saving raster: Earliest_PEMp2_20191231.tif - Earliest date of 2nd gen. adult emergence Saving summary map: Avg_PEMa1_20191231.png - Avg. date of 1st gen. egg laying Saving raster: Earliest_PEMl2_20191231.tif - Earliest date of 2nd gen. larval development Saving raster: Earliest_PEMe2_20191231.tif - Earliest date of 2nd gen. egg hatch Saving summary map: Avg_PEMp1_20191231.png - Avg. date of 1st gen. adult emergence Saving summary map: Avg_PEMe1_20191231.png - Avg. date of 1st gen. egg hatch Saving raster: Earliest_PEMa1_20191231.tif - Earliest date of 1st gen. egg laying Saving summary map: Avg_PEMl1_20191231.png - Avg. date of 1st gen. larval development Saving raster: Earliest_PEMp1_20191231.tif - Earliest date of 1st gen. adult emergence Saving raster: Earliest_PEMe1_20191231.tif - Earliest date of 1st gen. egg hatch Saving summary map: Earliest_PEMa2_20191231.png - Earliest date of 2nd gen. egg laying Saving raster: Earliest_PEMl1_20191231.tif - Earliest date of 1st gen. larval development Saving summary map: Earliest_PEMp2_20191231.png - Earliest date of 2nd gen. adult emergence Saving summary map: Earliest_PEMl2_20191231.png - Earliest date of 2nd gen. larval development Saving summary map: Earliest_PEMe2_20191231.png - Earliest date of 2nd gen. egg hatch Saving summary map: Earliest_PEMa1_20191231.png - Earliest date of 1st gen. egg laying Saving summary map: Earliest_PEMp1_20191231.png - Earliest date of 1st gen. adult emergence Saving summary map: Earliest_PEMe1_20191231.png - Earliest date of 1st gen. egg hatch Saving summary map: Earliest_PEMl1_20191231.png - Earliest date of 1st gen. larval development Done with Pest Event Maps ### WEIGHTED RASTER AND SUMMARY MAP OUTPUTS: LIFESTAGE ### Stages: OA, E, L, P, A Saving raster brick: Misc_output/OWadult.tif - OWadult relative pop. size for all 4 dates Saving raster brick: Misc_output/Pupae.tif - Pupae relative pop. size for all 4 dates Saving raster brick: Misc_output/Larvae.tif - Larvae relative pop. size for all 4 dates Saving raster brick: Misc_output/Egg.tif - Egg relative pop. size for all 4 dates Saving summary map: Misc_output/OWadult_20190701.png - OWadult relative pop. size on 07/01/2019 Saving summary map: Misc_output/Pupae_20190701.png - Pupae relative pop. size on 07/01/2019 Saving raster brick: Misc_output/Adult.tif - Adult relative pop. size for 4 dates Saving summary map: Misc_output/Larvae_20190701.png - Larvae relative pop. size on 07/01/2019 Saving summary map: Misc_output/Egg_20190701.png - Egg relative pop. size on 07/01/2019 Saving summary map: Misc_output/OWadult_20190831.png - OWadult relative pop. size on 08/31/2019 Saving summary map: Misc_output/OWadult_20191031.png - OWadult relative pop. size on 10/31/2019 Saving summary map: Misc_output/Adult_20190701.png - Adult relative pop. size on 07/01/2019 Saving summary map: Misc_output/Pupae_20190831.png - Pupae relative pop. size on 08/31/2019 Saving summary map: Misc_output/Larvae_20190831.png - Larvae relative pop. size on 08/31/2019 Saving summary map: Misc_output/Egg_20190831.png - Egg relative pop. size on 08/31/2019 Saving summary map: Misc_output/OWadult_20191231.png - OWadult relative pop. size on 12/31/2019 Saving summary map: Misc_output/Pupae_20191031.png - Pupae relative pop. size on 10/31/2019 Saving summary map: Misc_output/Adult_20190831.png - Adult relative pop. size on 08/31/2019 Saving summary map: Misc_output/Larvae_20191031.png - Larvae relative pop. size on 10/31/2019 Saving summary map: Misc_output/Egg_20191031.png - Egg relative pop. size on 10/31/2019 Saving summary map: Misc_output/Pupae_20191231.png - Pupae relative pop. size on 12/31/2019 Saving summary map: Misc_output/Adult_20191031.png - Adult relative pop. size on 10/31/2019 Saving summary map: Misc_output/Larvae_20191231.png - Larvae relative pop. size on 12/31/2019 Saving summary map: Misc_output/Egg_20191231.png - Egg relative pop. size on 12/31/2019 Saving summary map: Misc_output/Adult_20191231.png - Adult relative pop. size on 12/31/2019 Done with weighted raster summary map outputs for Lifestage ### WEIGHTED RASTER OUTPUT: NUMGEN ### Saving raster brick: Gen_0_cohort4.tif - Gen. 0 for all 4 dates Saving raster brick: Gen_0_cohort3.tif - Gen. 0 for all 4 dates Saving raster brick: Gen_0_cohort1.tif - Gen. 0 for all 4 dates Saving raster brick: Gen_0_cohort2.tif - Gen. 0 for all 4 dates Saving raster brick: Gen_0_cohort5.tif - Gen. 0 for all 4 dates Saving raster brick: Gen_0_cohort6.tif - Gen. 0 for all 4 dates Saving raster brick: Gen_1_cohort1.tif - Gen. 1 for all 4 dates Saving raster brick: Gen_1_cohort2.tif - Gen. 1 for all 4 dates Saving raster brick: Gen_1_cohort3.tif - Gen. 1 for all 4 dates Saving raster brick: Gen_1_cohort4.tif - Gen. 1 for all 4 dates Saving raster brick: Gen_1_cohort6.tif - Gen. 1 for all 4 dates Saving raster brick: Gen_1_cohort5.tif - Gen. 1 for all 4 dates Saving raster brick: Gen_2_cohort2.tif - Gen. 2 for all 4 dates Saving raster brick: Gen_2_cohort1.tif - Gen. 2 for all 4 dates Saving raster brick: Gen_2_cohort3.tif - Gen. 2 for all 4 dates Saving raster brick: Gen_2_cohort4.tif - Gen. 2 for all 4 dates Saving raster brick: Gen_2_cohort5.tif - Gen. 2 for all 4 dates Saving raster brick: Gen_2_cohort6.tif - Gen. 2 for all 4 dates Saving raster brick: Gen_3_cohort1.tif - Gen. 3 for all 4 dates Saving raster brick: Gen_3_cohort2.tif - Gen. 3 for all 4 dates Saving raster brick: Gen_3_cohort4.tif - Gen. 3 for all 4 dates Saving raster brick: Gen_3_cohort3.tif - Gen. 3 for all 4 dates Saving raster brick: Gen_3_cohort5.tif - Gen. 3 for all 4 dates Saving raster brick: Gen_3_cohort6.tif - Gen. 3 for all 4 dates Saving raster brick: Gen_4_cohort2.tif - Gen. 4 for all 4 dates Saving raster brick: Gen_4_cohort1.tif - Gen. 4 for all 4 dates Saving raster brick: Gen_4_cohort3.tif - Gen. 4 for all 4 dates Saving raster brick: Gen_4_cohort4.tif - Gen. 4 for all 4 dates Saving raster brick: Gen_4_cohort5.tif - Gen. 4 for all 4 dates Saving raster brick: Gen_4_cohort6.tif - Gen. 4 for all 4 dates Saving raster brick: Gen_5_cohort1.tif - Gen. 5 for all 4 dates Saving raster brick: Gen_5_cohort2.tif - Gen. 5 for all 4 dates Saving raster brick: Gen_5_cohort3.tif - Gen. 5 for all 4 dates Saving raster brick: Gen_5_cohort5.tif - Gen. 5 for all 4 dates Saving raster brick: Gen_5_cohort4.tif - Gen. 5 for all 4 dates Saving raster brick: Gen_6_cohort1.tif - Gen. 6 for all 4 dates Saving raster brick: Gen_6_cohort2.tif - Gen. 6 for all 4 dates Saving raster brick: Gen_5_cohort6.tif - Gen. 5 for all 4 dates Saving raster brick: Gen_6_cohort3.tif - Gen. 6 for all 4 dates Saving raster brick: Gen_6_cohort4.tif - Gen. 6 for all 4 dates Saving raster brick: Gen_6_cohort5.tif - Gen. 6 for all 4 dates Saving raster brick: Gen_7_cohort1.tif - Gen. 7 for all 4 dates Saving raster brick: Gen_6_cohort6.tif - Gen. 6 for all 4 dates Saving raster brick: Gen_7_cohort3.tif - Gen. 7 for all 4 dates Saving raster brick: Gen_7_cohort2.tif - Gen. 7 for all 4 dates Saving raster brick: Gen_7_cohort4.tif - Gen. 7 for all 4 dates Saving raster brick: Gen_7_cohort5.tif - Gen. 7 for all 4 dates Saving raster brick: Gen_8_cohort1.tif - Gen. 8 for all 4 dates Saving raster brick: Gen_7_cohort6.tif - Gen. 7 for all 4 dates Saving raster brick: Gen_8_cohort2.tif - Gen. 8 for all 4 dates Saving raster brick: Gen_8_cohort3.tif - Gen. 8 for all 4 dates Saving raster brick: Gen_8_cohort5.tif - Gen. 8 for all 4 dates Saving raster brick: Gen_8_cohort4.tif - Gen. 8 for all 4 dates Saving raster brick: Gen_8_cohort6.tif - Gen. 8 for all 4 dates Saving raster brick: Gen_9_cohort2.tif - Gen. 9 for all 4 dates Saving raster brick: Gen_9_cohort3.tif - Gen. 9 for all 4 dates Saving raster brick: Gen_9_cohort4.tif - Gen. 9 for all 4 dates Saving raster brick: Gen_9_cohort1.tif - Gen. 9 for all 4 dates Saving raster brick: Gen_9_cohort6.tif - Gen. 9 for all 4 dates Saving raster brick: Gen_9_cohort5.tif - Gen. 9 for all 4 dates Saving raster brick: Misc_output/Gen_1.tif - Gen. 1 for all 4 dates Saving raster brick: Misc_output/Gen_3.tif - Gen. 3 for all 4 dates Saving raster brick: Misc_output/Gen_2.tif - Gen. 2 for all 4 dates Saving raster brick: Misc_output/Gen_0.tif - Gen. 0 for all 4 dates Saving raster brick: Misc_output/Gen_4.tif - Gen. 4 for all 4 dates Saving raster brick: Misc_output/Gen_6.tif - Gen. 6 for all 4 dates Saving raster brick: Misc_output/Gen_7.tif - Gen. 7 for all 4 dates Saving raster brick: Misc_output/Gen_5.tif - Gen. 5 for all 4 dates Saving raster brick: Misc_output/Gen_8.tif - Gen. 8 for all 4 dates Saving raster brick: Misc_output/Gen_9.tif - Gen. 9 for all 4 dates Done with weighted raster outputs for NumGen ### SUMMARY MAP OUTPUT: NUMGEN ### Saving summary map: NumGen_20190701.png - Numbers of generations on 07/01/2019 Saving summary map: NumGen_20190831.png - Numbers of generations on 08/31/2019 Saving summary map: NumGen_20191231.png - Numbers of generations on 12/31/2019 Saving summary map: NumGen_20191031.png - Numbers of generations on 10/31/2019 Done with summary maps for NumGen ### ANALYSIS: LIFESTAGE WITH NUMBER OF GENS. ### Saving raster brick: Mismatch_cohort6.tif Mismatch Saving raster brick: Mismatch_cohort2.tif Mismatch Saving raster brick: Mismatch_cohort3.tif Mismatch Saving raster brick: Mismatch_cohort4.tif Mismatch Saving raster brick: Mismatch_cohort1.tif Mismatch Saving raster brick: Mismatch_cohort5.tif Mismatch Saving raster brick: AttVolt_all_weighted.tif Saving raster brick: Diapause_all_weighted.tif Saving raster brick: Mismatch_all_weighted.tif Saving raster brick: FullVolt_all_weighted.tif ### SUMMARY MAP OUTPUT - Diapause ### Replacing older generation vals with newer gen. vals in areas of overlap Done Assigning a generation number to pixels in the Adult raster brick Done ### SUMMARY MAP OUTPUT: LIFESTAGE W/ NO. OF GENS. ### Saving summary map: Misc_output/Adult_byGen_20190701.png - Relative pop. size of adults for each gen. on 07/01/2019 Saving summary map: Misc_output/Adult_byGen_20190831.png - Relative pop. size of adults for each gen. on 08/31/2019 Saving summary map: Misc_output/Adult_byGen_20191031.png - Relative pop. size of adults for each gen. on 10/31/2019 Saving summary map: Misc_output/Adult_byGen_20191231.png - Relative pop. size of adults for each gen. on 12/31/2019 Done with Lifestage with NumGen summary maps ### Done w/ final analyses and map production ### Run time for analyses and map production = 7.27 min Deleting, renaming, and moving miscellaneous files Renamed all final PNG files to include GCA in file name MODEL RUN DONE Run time for entire model = 11.85 min